STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20000Hypothetical protein. (716 aa)    
Predicted Functional Partners:
RAM_20005
Polyketide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
       0.714
RAM_42055
COG2939 Carboxypeptidase C (cathepsin A).
  
 0.658
RAM_45480
Carbamoyl phosphate synthase-like protein; COG0027 Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase).
  
    0.621
RAM_17500
Hypothetical protein.
  
     0.583
RAM_22345
COG1874 Beta-galactosidase; Belongs to the glycosyl hydrolase 35 family.
 
 0.565
LacZ-2
COG1874 Beta-galactosidase; Belongs to the glycosyl hydrolase 35 family.
 
 0.549
RAM_35510
NTPase-like protein; COG0489 ATPases involved in chromosome partitioning.
  
     0.539
RAM_19995
Lipase; COG1073 Hydrolases of the alpha/beta superfamily.
       0.516
RAM_17480
Hypothetical protein.
  
     0.504
RAM_20630
Hypothetical protein.
  
     0.497
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.