STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20040Hypothetical protein; COG3664 Beta-xylosidase. (702 aa)    
Predicted Functional Partners:
RAM_20915
Hypothetical protein.
 
 
 0.780
RAM_20855
Cellulose-binding protein.
 
  
 0.776
RAM_17355
Ricin-type beta-trefoil lectin domain-containing protein.
  
   
 0.775
RAM_29360
COG0425 Predicted redox protein, regulator of disulfide bond formation.
  
     0.759
AbfA-4
alpha-L-arabinofuranosidase.
  
     0.756
RAM_20045
Glycoside hydrolase; COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
0.747
RAM_33830
COG1309 Transcriptional regulator.
  
     0.727
AbfA-8
alpha-N-arabinofuranosidase.
  
     0.723
AbfA-7
alpha-N-arabinofuranosidase.
  
     0.714
RAM_07120
Carbohydrate-binding protein; COG2730 Endoglucanase.
 
   
 0.712
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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