STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20125COG1309 Transcriptional regulator. (222 aa)    
Predicted Functional Partners:
RAM_20130
Short chain dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
     0.658
RAM_09295
COG0789 Predicted transcriptional regulators.
  
    0.538
MarR-2
COG1846 Transcriptional regulators.
   
    0.504
RAM_14175
Pyridoxamine 5'-phosphate oxidase; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
    0.496
RAM_14595
COG1316 Transcriptional regulator.
   
    0.494
RAM_24120
COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
   
  
 0.478
RAM_26895
COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
   
  
 0.478
IciA
Chromosome replication initiation inhibitor protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
   
   0.471
RAM_06770
Hypothetical protein.
  
     0.456
RAM_14375
COG2345 Predicted transcriptional regulator.
   
    0.448
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.