STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20160Hypothetical protein. (118 aa)    
Predicted Functional Partners:
RhaA
L-rhamnose isomerase-like protein; COG4952 Predicted sugar isomerase.
 
  
 0.767
RhaB
Rhamnulokinase; COG1070 Sugar (pentulose and hexulose) kinases.
 
  
 0.766
RAM_20155
COG2186 Transcriptional regulators.
 
     0.751
xylB
D-xylulose kinase; COG1070 Sugar (pentulose and hexulose) kinases.
  
  
 0.682
RAM_20135
Racemase; COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.639
RAM_29955
COG0477 Permeases of the major facilitator superfamily.
  
  
 0.621
RhaD
Short chain dehydrogenase.
 
  
 0.595
RAM_15690
Amidohydrolase; COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
  
 0.576
RAM_20150
COG1653 ABC-type sugar transport system, periplasmic component.
 
    0.574
IolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; COG3962 Acetolactate synthase; Belongs to the TPP enzyme family.
   
  
 0.567
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.