STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20170COG1680 Beta-lactamase class C and other penicillin binding proteins. (487 aa)    
Predicted Functional Partners:
RAM_20180
COG2124 Cytochrome P450.
 
     0.818
RAM_20175
Hypothetical protein; COG1210 UDP-glucose pyrophosphorylase.
     
 0.790
TauD
COG2175 Probable taurine catabolism dioxygenase.
 
     0.775
RAM_20165
COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase.
       0.773
RAM_05320
Hypothetical protein.
  
     0.759
RAM_40005
COG2246 Predicted membrane protein.
 
     0.672
RAM_20730
Hyalin.
  
     0.595
YjaB
Acetyltransferase.
  
    0.582
RAM_20660
COG1680 Beta-lactamase class C and other penicillin binding proteins.
  
   
 0.578
RAM_18065
COG1680 Beta-lactamase class C and other penicillin binding proteins; Belongs to the class-A beta-lactamase family.
  
   
 0.556
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.