STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TauDCOG2175 Probable taurine catabolism dioxygenase. (290 aa)    
Predicted Functional Partners:
SsuD-7
Alkanesulfonate monooxygenase; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
 
 
  0.933
TauD-3
COG2175 Probable taurine catabolism dioxygenase.
  
  
 
0.916
CysH
Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite.
  
  
 0.915
GadB
COG0076 Glutamate decarboxylase and related PLP-dependent proteins; Belongs to the group II decarboxylase family.
  
 
 0.913
RAM_06600
FMN reductase; COG0431 Predicted flavoprotein.
  
 
  0.905
RAM_45520
FMN reductase; COG0431 Predicted flavoprotein.
  
 
  0.905
Ggt
Gamma-glutamyltransferase; COG0346 Lactoylglutathione lyase and related lyases.
   
 
  0.904
NirA
COG0155 Sulfite reductase, beta subunit (hemoprotein); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
     
 0.902
RAM_03275
Aminotransferase class III; COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
  0.900
SseA
Rhodanese-like protein; COG2897 Rhodanese-related sulfurtransferase.
    
  0.900
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.