STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20215Rare lipoprotein A; COG4305 Endoglucanase C-terminal domain/subunit and related proteins. (291 aa)    
Predicted Functional Partners:
UbiA
Homogenitisate phytyltransferase; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases.
  
     0.564
AbfA-4
alpha-L-arabinofuranosidase.
  
   
 0.557
AbfA-7
alpha-N-arabinofuranosidase.
  
   
 0.533
AbfA-6
alpha-N-arabinofuranosidase.
  
   
 0.522
AbfA
alpha-N-arabinofuranosidase.
  
   
 0.513
AbfA-8
alpha-N-arabinofuranosidase.
  
     0.513
RAM_20210
COG1309 Transcriptional regulator.
       0.495
AbfA-3
alpha-N-arabinofuranosidase.
  
   
 0.482
RAM_22600
Pectinesterase; COG4677 Pectin methylesterase.
  
   
 0.473
RAM_41810
Endo-1,4-beta-glucanase; COG2730 Endoglucanase.
 
   
 0.471
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.