STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20235COG1846 Transcriptional regulators. (162 aa)    
Predicted Functional Partners:
RAM_20240
FAD-dependent oxidoreductase; COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
 
    0.657
RAM_26010
Hypothetical protein; COG0438 Glycosyltransferase.
  
   
 0.490
RAM_42250
Alanine rich lipoprotein LppW.
  
     0.452
RAM_19155
Hypothetical protein.
  
     0.445
RAM_01655
Lipoprotein; COG1686 D-alanyl-D-alanine carboxypeptidase.
  
     0.442
RAM_02080
Hypothetical protein.
  
     0.432
RAM_26410
Hypothetical protein.
  
 
   0.431
RAM_20245
Hypothetical protein.
       0.427
HemN
COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases.
  
     0.403
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.