STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20275COG1879 ABC-type sugar transport system, periplasmic component. (355 aa)    
Predicted Functional Partners:
RbsC-4
COG4158 Predicted ABC-type sugar transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 0.992
RbsC-3
COG4158 Predicted ABC-type sugar transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
 0.936
RAM_20285
Xylose isomerase; COG1082 Sugar phosphate isomerases/epimerases.
 
    0.865
RAM_20280
Oxidoreductase; COG0673 Predicted dehydrogenases and related proteins.
 
  
 0.844
RAM_22405
Sugar ABC transporter permease; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
 
 0.786
RAM_22410
Inner membrane ABC transporter permease protein YjfF; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
 
 0.780
RbsC
Sugar ABC transporter permease; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
 
 0.732
RbsC-2
Sugar ABC transporter permease; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
 
 0.718
AraH
L-arabinose ABC transporter permease; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
 
 0.713
RAM_22400
COG1129 ABC-type sugar transport system, ATPase component.
 
 
 0.678
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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