STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20295COG1309 Transcriptional regulator. (169 aa)    
Predicted Functional Partners:
RAM_20305
COG1309 Transcriptional regulator.
 
     0.898
RAM_18315
COG1309 Transcriptional regulator.
  
     0.758
RAM_15475
COG1309 Transcriptional regulator.
  
     0.757
RAM_09525
COG1309 Transcriptional regulator.
  
     0.755
RAM_33015
COG1309 Transcriptional regulator.
  
     0.738
RAM_20300
Esterase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.601
Qor-10
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
 
     0.592
RAM_47300
COG1309 Transcriptional regulator.
  
     0.463
RAM_16320
Methyltransferase; COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.
  
 
   0.430
RAM_07230
COG1309 Transcriptional regulator.
  
     0.426
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.