STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20300Esterase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). (245 aa)    
Predicted Functional Partners:
RAM_20305
COG1309 Transcriptional regulator.
       0.773
RAM_20295
COG1309 Transcriptional regulator.
       0.601
RAM_00635
Hypothetical protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.471
RAM_31885
Hypothetical protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.470
mhpB
3-(2,3-dihydroxyphenyl)propionate dioxygenase.
 
  
 0.467
Qor-10
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
  
   0.464
RAM_33195
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.459
RAM_31780
Hypothetical protein.
  
     0.420
PcaC-5
Carboxymuconolactone decarboxylase.
 
    0.411
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.