STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20310Large protein. (949 aa)    
Predicted Functional Partners:
RAM_26630
alpha-L-fucosidase; COG4962 Flp pilus assembly protein, ATPase CpaF.
 
  
  0.955
RAM_15730
COG3669 Alpha-L-fucosidase.
 
  
 
0.926
RAM_16740
COG3669 Alpha-L-fucosidase.
 
  
 
0.923
RAM_07780
COG3669 Alpha-L-fucosidase.
 
  
  0.913
RAM_20315
Hypothetical protein; COG3509 Poly(3-hydroxybutyrate) depolymerase.
 
    
0.750
RAM_17360
COG3533 Uncharacterized protein conserved in bacteria.
  
     0.744
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.723
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.723
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.723
RAM_27340
COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.712
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.