STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20325COG3533 Uncharacterized protein conserved in bacteria. (775 aa)    
Predicted Functional Partners:
RAM_16710
Xylosidase/glycosyl hydrolase; COG3507 Beta-xylosidase.
 
   
 0.780
RAM_16715
Hypothetical protein; COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.773
RAM_16765
Hypothetical protein; COG3509 Poly(3-hydroxybutyrate) depolymerase.
  
     0.718
RAM_38265
COG3534 Alpha-L-arabinofuranosidase.
 
   
 0.710
RAM_40240
COG3534 Alpha-L-arabinofuranosidase.
 
   
 0.656
RAM_27340
COG3507 Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.583
AbnA
Arabinan endo-1,5-alpha-L-arabinosidase; COG3507 Beta-xylosidase.
 
   
 0.575
AbfA-5
alpha-L-arabinofuranosidase.
 
     0.565
RAM_22600
Pectinesterase; COG4677 Pectin methylesterase.
  
     0.564
RAM_17000
Hypothetical protein; COG3507 Beta-xylosidase.
   
 0.560
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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