STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20345Hypothetical protein. (186 aa)    
Predicted Functional Partners:
RAM_20340
COG1309 Transcriptional regulator.
 
     0.702
RAM_19350
COG3209 Rhs family protein.
  
     0.642
RAM_19345
LamG domain-containing protein receptor.
  
     0.583
RAM_28140
COG3209 Rhs family protein.
  
     0.572
RAM_16480
Terpene synthase.
  
     0.532
RAM_37775
COG3209 Rhs family protein.
  
     0.510
RAM_23985
Hypothetical protein; COG3467 Predicted flavin-nucleotide-binding protein.
  
     0.489
RAM_48005
Hypothetical protein.
  
     0.482
RAM_06620
COG1309 Transcriptional regulator.
  
     0.468
RAM_04560
COG2124 Cytochrome P450.
  
     0.466
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.