STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20365COG3693 Beta-1,4-xylanase. (799 aa)    
Predicted Functional Partners:
RAM_43615
Carbohydrate-binding protein.
  
   
 0.765
RAM_26385
Endo-1,4-beta-glucanase; COG5297 Cellobiohydrolase A (1,4-beta-cellobiosidase A).
 
   
 0.747
XynA
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
   
 0.728
RAM_22975
Hypothetical protein.
 
     0.720
RAM_18715
Hypothetical protein.
 
     0.719
RAM_26445
COG5297 Cellobiohydrolase A (1,4-beta-cellobiosidase A); Belongs to the glycosyl hydrolase family 6.
   
 0.719
RAM_16710
Xylosidase/glycosyl hydrolase; COG3507 Beta-xylosidase.
   
 0.717
AbfA-8
alpha-N-arabinofuranosidase.
 
    
0.709
RAM_19035
Esterase/lipase; COG3509 Poly(3-hydroxybutyrate) depolymerase.
 
   0.640
RAM_38340
PHB depolymerase family esterase; COG3509 Poly(3-hydroxybutyrate) depolymerase.
 
   0.626
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.