STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20365COG3693 Beta-1,4-xylanase. (799 aa)    
Predicted Functional Partners:
RAM_26385
Endo-1,4-beta-glucanase; COG5297 Cellobiohydrolase A (1,4-beta-cellobiosidase A).
 
 
 
 0.783
RAM_43615
Carbohydrate-binding protein.
  
     0.759
RAM_26445
COG5297 Cellobiohydrolase A (1,4-beta-cellobiosidase A); Belongs to the glycosyl hydrolase family 6.
 
 
 
 0.752
RAM_38105
Beta-mannosidase; COG2755 Lysophospholipase L1 and related esterases.
 
 
 
 0.744
XynA
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.724
RAM_22975
Hypothetical protein.
 
   
 0.723
RAM_18715
Hypothetical protein.
 
   
 0.722
RAM_16710
Xylosidase/glycosyl hydrolase; COG3507 Beta-xylosidase.
 
   
 0.714
AbfA-8
alpha-N-arabinofuranosidase.
 
    
0.709
RAM_38095
COG2351 Transthyretin-like protein.
 
 
 
 0.669
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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