STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20385GAF domain-containing protein; COG2203 FOG: GAF domain. (562 aa)    
Predicted Functional Partners:
RAM_20395
Feruloyl esterase.
 
     0.631
RAM_20390
COG0477 Permeases of the major facilitator superfamily.
 
     0.612
RAM_24330
Hypothetical protein.
  
     0.533
RAM_21020
Glycogen debranching enzyme.
  
     0.523
RAM_27435
Hypothetical protein.
  
     0.509
RAM_27440
Hypothetical protein.
  
     0.508
RAM_29130
Cupin 2 domain-containing protein; COG3435 Gentisate 1,2-dioxygenase.
  
     0.505
RAM_20890
Fused protein kinase and phosphatase containing multi-sensor domain; COG2202 FOG: PAS/PAC domain.
  
 
 0.480
RAM_27445
COG0477 Permeases of the major facilitator superfamily.
 
     0.469
RAM_23045
Two-component system sensor kinase; COG2770 FOG: HAMP domain.
  
 
 0.459
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.