STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20410Hypothetical protein. (574 aa)    
Predicted Functional Partners:
RAM_33335
Hypothetical protein.
  
     0.672
RAM_38910
GNAT family acetyltransferase; COG0456 Acetyltransferases.
  
     0.671
RAM_12190
Hypothetical protein.
  
     0.638
RAM_29130
Cupin 2 domain-containing protein; COG3435 Gentisate 1,2-dioxygenase.
  
     0.568
RAM_26230
Hypothetical protein.
  
     0.546
RAM_20405
Hypothetical protein.
       0.535
RAM_23645
Hypothetical protein.
  
     0.532
RAM_40505
roadblock/LC7 family protein; COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid.
  
     0.528
RAM_18150
Hypothetical protein.
  
     0.501
XynA-3
Endo-1,4-beta-xylanase; COG3693 Beta-1,4-xylanase.
       0.501
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.