STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20420Hypothetical protein; COG0495 Leucyl-tRNA synthetase. (386 aa)    
Predicted Functional Partners:
RAM_36075
COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
  
     0.626
RAM_17165
Hypothetical protein; COG2508 Regulator of polyketide synthase expression.
 
     0.548
RAM_08960
Hypothetical protein; COG2508 Regulator of polyketide synthase expression.
 
     0.502
RAM_39085
Hypothetical protein; COG2508 Regulator of polyketide synthase expression.
  
     0.491
AcpP-4
COG0236 Acyl carrier protein.
       0.489
FabF-3
3-oxoacyl-(acyl carrier protein) synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
       0.489
FabH
COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III.
       0.478
RAM_20440
COG0463 Glycosyltransferases involved in cell wall biogenesis.
       0.465
RAM_20445
COG2124 Cytochrome P450.
       0.465
RAM_20450
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
       0.465
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.