STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20460COG3629 DNA-binding transcriptional activator of the SARP family. (902 aa)    
Predicted Functional Partners:
RAM_41925
NTPase-like protein; COG1192 ATPases involved in chromosome partitioning.
 
     0.706
RAM_29815
Hypothetical protein; COG5635 Predicted NTPase (NACHT family).
  
     0.679
RAM_31450
Hypothetical protein.
 
     0.679
RAM_24140
Hypothetical protein.
  
    0.662
RAM_24300
Methyltransferase type 12; COG0500 SAM-dependent methyltransferases.
  
     0.642
RAM_32720
Hypothetical protein.
 
     0.581
RAM_21980
Hypothetical protein; COG2508 Regulator of polyketide synthase expression.
  
    0.568
RAM_26010
Hypothetical protein; COG0438 Glycosyltransferase.
  
     0.551
RAM_07380
TPR repeat-containing protein; COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
 
  
 0.532
RAM_35805
LuxR family transcriptional regulator fused with ATPase domain; COG3903 Predicted ATPase.
 
    0.501
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.