STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20530ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component. (856 aa)    
Predicted Functional Partners:
RAM_20525
COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
  
 0.882
RAM_20520
COG4585 Signal transduction histidine kinase.
 
    0.583
RAM_20535
COG1233 Phytoene dehydrogenase and related proteins.
       0.541
RAM_46935
COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
  
 0.514
RAM_31505
Hypothetical protein.
  
     0.510
RAM_07040
COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
  
 0.506
RAM_15175
Hypothetical protein.
  
     0.486
RAM_43445
ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
    0.484
RAM_18025
ABC transporter permease; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
    0.445
RAM_01640
Hypothetical protein; COG1361 S-layer domain.
  
     0.431
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.