STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20550COG1960 Acyl-CoA dehydrogenases. (407 aa)    
Predicted Functional Partners:
RAM_20540
COG0236 Acyl carrier protein.
    
  0.812
CysK-2
COG0031 Cysteine synthase.
  
    0.806
FixA
COG2086 Electron transfer flavoprotein, beta subunit.
 
 
 0.797
FixB
COG2025 Electron transfer flavoprotein, alpha subunit.
 
 
 0.792
RAM_20560
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
     
 0.786
RAM_20545
Hypothetical protein.
       0.773
RAM_20565
COG0842 ABC-type multidrug transport system, permease component.
       0.773
RAM_20705
COG1960 Acyl-CoA dehydrogenases.
  
     0.772
RAM_36775
COG1960 Acyl-CoA dehydrogenases.
  
     0.765
Acd-10
COG1960 Acyl-CoA dehydrogenases.
  
     0.764
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.