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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CysK-2COG0031 Cysteine synthase. (325 aa)    
Predicted Functional Partners:
Ocd-3
COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.
 
 
 0.958
RAM_20545
Hypothetical protein.
  
    0.808
RAM_20550
COG1960 Acyl-CoA dehydrogenases.
  
    0.806
RAM_20560
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
     
 0.783
RAM_20565
COG0842 ABC-type multidrug transport system, permease component.
       0.783
RAM_20540
COG0236 Acyl carrier protein.
       0.779
cysC
Bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Catalyzes the synthesis of activated sulfate. Belongs to the APS kinase family.
  
  
 0.775
MetB-3
COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases.
 
 
 0.682
MetB
COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases.
 
 
 0.661
cysS
COG0215 Cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.619
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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