STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocd-3COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog. (345 aa)    
Predicted Functional Partners:
CysK-3
COG0031 Cysteine synthase.
 
  
 0.930
RAM_20595
Hypothetical protein; COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ).
 
     0.730
CysK-4
COG0031 Cysteine synthase.
 
  
 0.716
FabG-10
3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.650
CysK-2
COG0031 Cysteine synthase.
 
  
 0.604
RAM_20580
Hypothetical protein; COG2409 Predicted drug exporters of the RND superfamily.
 
     0.539
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
     
 0.517
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
     
 0.517
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
     
 0.517
AcpP-5
COG0236 Acyl carrier protein.
 
     0.494
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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