STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20595Hypothetical protein; COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ). (460 aa)    
Predicted Functional Partners:
RAM_03800
acetyl/propionyl-CoA carboxylase, carboxyltransferase subunit; COG0777 Acetyl-CoA carboxylase beta subunit.
  
 
 0.964
RAM_20500
3-oxoacyl-(ACP) synthase III.
 
  
 0.806
RAM_18465
COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III.
 
  
 0.790
FabG-10
3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.763
LysA-2
COG0019 Diaminopimelate decarboxylase.
 
     0.733
Ocd-3
COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog.
 
     0.730
CysK-3
COG0031 Cysteine synthase.
   
 
 0.690
RAM_36280
COG1985 Pyrimidine reductase, riboflavin biosynthesis.
   
   0.680
RAM_10860
COG1073 Hydrolases of the alpha/beta superfamily.
 
   
 0.670
RAM_10855
COG1396 Predicted transcriptional regulators.
  
     0.666
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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