STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20660COG1680 Beta-lactamase class C and other penicillin binding proteins. (389 aa)    
Predicted Functional Partners:
RAM_12310
COG1680 Beta-lactamase class C and other penicillin binding proteins.
  
     0.700
RAM_15785
COG1680 Beta-lactamase class C and other penicillin binding proteins.
  
   
 0.644
RAM_10185
COG1680 Beta-lactamase class C and other penicillin binding proteins.
  
     0.585
RAM_20170
COG1680 Beta-lactamase class C and other penicillin binding proteins.
  
   
 0.578
RAM_19660
COG1680 Beta-lactamase class C and other penicillin binding proteins.
  
     0.557
RAM_20650
COG0642 Signal transduction histidine kinase.
       0.549
RAM_20655
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
     
 0.549
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.484
RAM_18765
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.484
RAM_27510
COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
  
 0.484
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.