STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20680Hypothetical protein. (448 aa)    
Predicted Functional Partners:
RAM_20685
COG0477 Permeases of the major facilitator superfamily.
  
    0.780
PaaX-2
PaaX family transcriptional regulator; COG3327 Phenylacetic acid-responsive transcriptional repressor.
 
     0.640
RAM_16885
Glyoxalase/bleomycin resistance protein/dioxygenase; COG0346 Lactoylglutathione lyase and related lyases.
 
     0.583
RAM_20675
Hypothetical protein; COG2910 Putative NADH-flavin reductase.
 
     0.571
RAM_33335
Hypothetical protein.
  
     0.542
RAM_30950
TetR family transcriptional regulator.
  
     0.528
RAM_20970
Vanillate monooxygenase; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit.
  
     0.525
RAM_24395
ABC transporter substrate-binding protein; COG1653 ABC-type sugar transport system, periplasmic component.
  
     0.518
RAM_20895
Hypothetical protein.
  
     0.490
RAM_41885
LuxR family transcriptional regulator fused with ATPase domain; COG3899 Predicted ATPase.
  
    0.455
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.