STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20705COG1960 Acyl-CoA dehydrogenases. (364 aa)    
Predicted Functional Partners:
PaaH
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 0.907
RAM_20710
COG0236 Acyl carrier protein.
 
  
 0.854
RAM_20700
FkbH-like protein; COG3882 Predicted enzyme involved in methoxymalonyl-ACP biosynthesis.
 
   
 0.832
FixA
COG2086 Electron transfer flavoprotein, beta subunit.
 
 
 0.775
RAM_20550
COG1960 Acyl-CoA dehydrogenases.
  
     0.772
RAM_36775
COG1960 Acyl-CoA dehydrogenases.
  
     0.772
Acd-6
COG1960 Acyl-CoA dehydrogenases.
  
     0.771
RAM_19520
COG1960 Acyl-CoA dehydrogenases.
  
     0.769
FixB
COG2025 Electron transfer flavoprotein, alpha subunit.
 
 
 0.766
RAM_12755
COG1960 Acyl-CoA dehydrogenases.
  
     0.747
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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