STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20735Oxidoreductase; COG1233 Phytoene dehydrogenase and related proteins. (415 aa)    
Predicted Functional Partners:
CrtB-2
COG1562 Phytoene/squalene synthetase.
 
  
 0.922
CrtI-2
COG1233 Phytoene dehydrogenase and related proteins.
 
     0.820
CrtU
Isorenieratene synthase.
     
 0.810
RAM_20770
Polyprenyl synthetase; COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
  
  
 0.805
UbiE-2
COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.
  
  
 0.792
RAM_20755
Lycopene cyclase.
     
 0.790
RAM_20750
Lycopene cyclase.
       0.782
CrtB
COG1562 Phytoene/squalene synthetase.
 
  
 0.675
RAM_20785
Zeta-phytoene desaturase; COG1233 Phytoene dehydrogenase and related proteins.
 
     0.536
ChlD
COG1239 Mg-chelatase subunit ChlI.
 
  
 0.521
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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