STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20750Lycopene cyclase. (106 aa)    
Predicted Functional Partners:
RAM_20755
Lycopene cyclase.
 
     0.951
CrtU
Isorenieratene synthase.
 
     0.932
UbiE-2
COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.
 
     0.871
CrtI-2
COG1233 Phytoene dehydrogenase and related proteins.
 
     0.850
CrtB-2
COG1562 Phytoene/squalene synthetase.
 
     0.849
RAM_20770
Polyprenyl synthetase; COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
 
     0.825
RAM_16395
Lycopene cyclase CrtYc.
 
     0.792
RAM_20735
Oxidoreductase; COG1233 Phytoene dehydrogenase and related proteins.
       0.782
RAM_41605
Hypothetical protein.
  
     0.674
RAM_20810
Rieske (2Fe-2S) domain-containing protein; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit.
 
     0.661
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.