STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CrtI-2COG1233 Phytoene dehydrogenase and related proteins. (491 aa)    
Predicted Functional Partners:
CrtB-2
COG1562 Phytoene/squalene synthetase.
 
 0.997
CrtB
COG1562 Phytoene/squalene synthetase.
 
 0.988
CrtU
Isorenieratene synthase.
 
   
 0.907
CrtI
COG1233 Phytoene dehydrogenase and related proteins.
  
  
 
0.902
RAM_20755
Lycopene cyclase.
 
   
 0.868
RAM_20750
Lycopene cyclase.
 
   
 0.856
RAM_20770
Polyprenyl synthetase; COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
  
  
 0.828
UbiE-2
COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis.
 
  
 0.826
RAM_20735
Oxidoreductase; COG1233 Phytoene dehydrogenase and related proteins.
 
     0.818
ChlD
COG1239 Mg-chelatase subunit ChlI.
 
  
 0.628
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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