STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20780COG0463 Glycosyltransferases involved in cell wall biogenesis. (366 aa)    
Predicted Functional Partners:
RAM_20775
COG2324 Predicted membrane protein.
 
   
 0.962
RAM_20785
Zeta-phytoene desaturase; COG1233 Phytoene dehydrogenase and related proteins.
 
   
 0.925
RAM_20890
Fused protein kinase and phosphatase containing multi-sensor domain; COG2202 FOG: PAS/PAC domain.
 
  
 0.826
RAM_01960
Signal transduction protein containing EAL, PAS and GGDEF domain; COG2202 FOG: PAS/PAC domain.
  
  
 0.679
CrtB-2
COG1562 Phytoene/squalene synthetase.
 
  
 0.568
PgsA-2
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; COG0558 Phosphatidylglycerophosphate synthase.
 
   
 0.558
RAM_30220
Two-component system sensor kinase; COG2202 FOG: PAS/PAC domain.
 
 
 0.525
RAM_10105
Creatinine amidohydrolase; COG1402 Uncharacterized protein, putative amidase.
  
  
 0.490
CrtI-2
COG1233 Phytoene dehydrogenase and related proteins.
 
   
 0.490
RAM_35740
Creatinine amidohydrolase; COG1402 Uncharacterized protein, putative amidase.
  
  
 0.490
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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