STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20815COG0395 ABC-type sugar transport system, permease component. (271 aa)    
Predicted Functional Partners:
UgpA
COG1175 ABC-type sugar transport systems, permease components.
 
   0.943
RAM_20825
COG1653 ABC-type sugar transport system, periplasmic component.
 
 
 0.942
RAM_38480
COG1175 ABC-type sugar transport systems, permease components.
 
   0.854
RAM_16235
COG1175 ABC-type sugar transport systems, permease components.
 
   0.851
RAM_27360
COG1175 ABC-type sugar transport systems, permease components.
 
   0.851
RAM_27365
COG1653 ABC-type sugar transport system, periplasmic component.
 
 
 0.847
RAM_35495
COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.847
CebF
COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.845
CebF-3
COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.845
MsmF
COG1175 ABC-type sugar transport systems, permease components.
 
 
 0.844
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.