STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20850COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). (250 aa)    
Predicted Functional Partners:
RAM_20845
Hypothetical protein.
 
     0.824
AcrR-2
COG1309 Transcriptional regulator.
 
     0.766
RAM_17775
Luciferase-like protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
  
    0.587
RAM_09475
Hypothetical protein; COG0112 Glycine/serine hydroxymethyltransferase.
  
     0.537
RAM_06030
Hypothetical protein.
  
     0.510
RAM_00955
Hypothetical protein.
  
     0.488
RAM_40535
Hypothetical protein.
  
     0.485
LacI-10
COG1609 Transcriptional regulators.
       0.483
RAM_05965
Hypothetical protein.
  
     0.439
RAM_13480
Hypothetical protein.
  
     0.429
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.