STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20860Hypothetical protein. (1032 aa)    
Predicted Functional Partners:
GlgP
COG0058 Glucan phosphorylase.
  
 
 0.633
RAM_15600
Arabinan endo-1,5-alpha-L-arabinosidase.
 
     0.563
RAM_20895
Hypothetical protein.
 
     0.515
RAM_31770
RDD domain-containing protein.
  
     0.513
RAM_20855
Cellulose-binding protein.
       0.505
RAM_21020
Glycogen debranching enzyme.
  
     0.502
RAM_28970
COG1309 Transcriptional regulator.
  
     0.494
RAM_05320
Hypothetical protein.
  
     0.472
RAM_22760
Glycosyl hydrolase; COG3250 Beta-galactosidase/beta-glucuronidase.
 
   
 0.464
RAM_20865
Hypothetical protein.
       0.450
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.