STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20895Hypothetical protein. (547 aa)    
Predicted Functional Partners:
RAM_02820
Exopolysaccharide biosynthesis protein.
  
 
 0.852
RAM_20890
Fused protein kinase and phosphatase containing multi-sensor domain; COG2202 FOG: PAS/PAC domain.
     
 0.776
RAM_19590
Amidohydrolase; COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold.
  
     0.725
RAM_01210
COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
  
  
 0.710
RAM_29845
Hypothetical protein.
  
     0.639
RAM_14785
Hypothetical protein.
  
     0.637
LivK-3
ABC transporter substrate-binding protein; COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
  
   
 0.610
RAM_29840
Integrase; COG2801 Transposase and inactivated derivatives.
  
     0.600
RAM_27605
COG0842 ABC-type multidrug transport system, permease component.
 
  
 0.598
RAM_20885
NAD-dependent epimerase/dehydratase; COG0451 Nucleoside-diphosphate-sugar epimerases.
 
  
 0.595
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.