STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20915Hypothetical protein. (249 aa)    
Predicted Functional Partners:
RAM_17355
Ricin-type beta-trefoil lectin domain-containing protein.
  
     0.768
RAM_20040
Hypothetical protein; COG3664 Beta-xylosidase.
 
 
 0.768
RAM_29360
COG0425 Predicted redox protein, regulator of disulfide bond formation.
  
     0.716
RAM_20855
Cellulose-binding protein.
 
  
 0.647
RAM_22055
Hypothetical protein.
 
  
 0.616
RAM_28080
Hypothetical protein.
  
     0.616
RAM_22345
COG1874 Beta-galactosidase; Belongs to the glycosyl hydrolase 35 family.
  
     0.605
RAM_32380
4,5-dihydroxyphthalate decarboxylase.
  
  
 0.547
RAM_06740
Carbohydrate-binding protein.
 
 
 0.540
RAM_24155
Lanthionine synthetase; COG4403 Lantibiotic modifying enzyme.
  
     0.538
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: medium (52%) [HD]