STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20955Large ATP-binding protein; COG5635 Predicted NTPase (NACHT family). (1091 aa)    
Predicted Functional Partners:
RAM_19820
Hypothetical protein.
 
     0.692
RAM_11750
Hypothetical protein.
 
     0.667
RAM_20950
Hypothetical protein; COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthases and related enzymes.
       0.564
RAM_03390
Hypothetical protein.
 
     0.528
RAM_11615
Hydrolase; COG4247 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase).
  
     0.525
RAM_40600
Hypothetical protein.
  
     0.490
RAM_18145
Hypothetical protein; COG0296 1,4-alpha-glucan branching enzyme.
  
     0.482
RAM_22000
Hypothetical protein.
  
     0.470
RAM_22275
Hypothetical protein.
  
     0.463
RAM_07460
Hypothetical protein.
  
     0.437
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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