STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20975COG1414 Transcriptional regulator. (265 aa)    
Predicted Functional Partners:
RAM_31865
COG1414 Transcriptional regulator.
  
     0.774
RAM_40340
COG1414 Transcriptional regulator.
  
     0.772
RAM_35605
COG1414 Transcriptional regulator.
  
     0.733
RAM_13390
UreA amidolyase; COG0439 Biotin carboxylase.
  
    0.725
RAM_20970
Vanillate monooxygenase; COG4638 Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit.
 
   
 0.647
RAM_20960
Phthalate 4,5-dioxygenase reductase subunit; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
       0.574
RAM_20965
Hypothetical protein.
       0.574
RAM_00805
COG1414 Transcriptional regulator.
  
     0.498
RAM_20980
Fatty acid desaturase.
       0.441
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.