STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_20990ATPase; COG2251 Predicted nuclease (RecB family). (1137 aa)    
Predicted Functional Partners:
RAM_26595
Hypothetical protein.
  
    0.754
RAM_26255
Hypothetical protein.
  
    0.730
IolB
5-deoxy-glucuronate isomerase; COG3718 Uncharacterized enzyme involved in inositol metabolism.
   
    0.627
RAM_32260
Hypothetical protein; COG1106 Predicted ATPases.
  
    0.626
RAM_29580
Transposase; COG5659 FOG: Transposase.
  
    0.575
RAM_29745
Transposase; COG5659 FOG: Transposase.
  
    0.575
RAM_36305
Transposase; COG5659 FOG: Transposase.
  
    0.575
RAM_05325
Acyltransferase; COG1835 Predicted acyltransferases.
 
    0.543
RAM_33060
Acyltransferase; COG1835 Predicted acyltransferases.
 
    0.542
RAM_19190
Acyltransferase; COG1835 Predicted acyltransferases.
 
    0.522
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.