STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
RAM_21015Methyltransferase; COG0500 SAM-dependent methyltransferases. (265 aa)    
Predicted Functional Partners:
CobI
COG2243 Precorrin-2 methylase; Belongs to the precorrin methyltransferase family.
  
  
 0.896
CobM
COG2875 Precorrin-4 methylase; Belongs to the precorrin methyltransferase family.
  
  
 0.665
CobK
COG2099 Precorrin-6x reductase.
  
  
 0.539
RAM_21005
Hypothetical protein.
       0.536
RAM_21010
Hypothetical protein.
       0.536
CobF
Precorrin 6A synthase; COG2243 Precorrin-2 methylase.
  
  
 0.535
CysG
uroporphyrin-III C-methyltransferase/precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase; COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain).
  
  
 0.493
cobQ
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
  
  
 0.490
CobH
precorrin-8X methylmutase; COG2082 Precorrin isomerase.
  
  
 0.481
RAM_32620
Hypothetical protein.
  
    0.457
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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