STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_21030Hypothetical protein; COG1158 Transcription termination factor. (134 aa)    
Predicted Functional Partners:
RAM_21795
COG0438 Glycosyltransferase.
 
     0.707
RAM_21790
COG0438 Glycosyltransferase.
  
     0.697
RAM_21710
Glycosyl transferase; COG0859 ADP-heptose:LPS heptosyltransferase.
 
     0.671
RAM_21750
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.665
RAM_21745
Glycosyl transferase; COG0859 ADP-heptose:LPS heptosyltransferase.
 
     0.575
RAM_21755
D-beta-D-heptose 7-phosphate kinase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
 
     0.493
RAM_16905
Hypothetical protein.
  
     0.485
RAM_20995
Hypothetical protein.
  
     0.483
RAM_15875
Hypothetical protein.
  
     0.469
RAM_21705
Hypothetical protein.
 
     0.457
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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