STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CheB-3Chemotaxis-specific methylesterase CheB; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain. (342 aa)    
Predicted Functional Partners:
CheR
COG1352 Methylase of chemotaxis methyl-accepting proteins.
 
 0.998
CheR-2
COG1352 Methylase of chemotaxis methyl-accepting proteins.
  
 0.995
CheB-2
Chemotaxis-specific methylesterase CheB; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
 
  
 
0.962
RAM_18250
PAS domain-containing sensor protein; COG2202 FOG: PAS/PAC domain.
 
  
 0.883
RAM_21050
Hypothetical protein.
 
     0.824
RAM_39015
Two-component system response regulator; COG0784 FOG: CheY-like receiver.
 
 
 0.728
RAM_23045
Two-component system sensor kinase; COG2770 FOG: HAMP domain.
 
 
 0.723
RAM_10000
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.714
RAM_39020
Two-component system sensor kinase; COG0642 Signal transduction histidine kinase.
  
 0.691
RAM_01960
Signal transduction protein containing EAL, PAS and GGDEF domain; COG2202 FOG: PAS/PAC domain.
  
 0.665
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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