STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_21050Hypothetical protein. (254 aa)    
Predicted Functional Partners:
CheR-2
COG1352 Methylase of chemotaxis methyl-accepting proteins.
 
   
 0.856
CheB-3
Chemotaxis-specific methylesterase CheB; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
 
     0.827
RAM_20890
Fused protein kinase and phosphatase containing multi-sensor domain; COG2202 FOG: PAS/PAC domain.
 
 
 0.814
RAM_30220
Two-component system sensor kinase; COG2202 FOG: PAS/PAC domain.
 
 
 0.739
RsbV-3
COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
 
 
 0.669
RAM_16275
COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
 
 
 0.618
RAM_18250
PAS domain-containing sensor protein; COG2202 FOG: PAS/PAC domain.
 
     0.617
RAM_21060
Hypothetical protein.
       0.599
RAM_30205
COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
 
 
 0.596
RAM_38175
Serine/threonine phosphatase; COG2202 FOG: PAS/PAC domain.
 
 
 0.586
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.