STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_21125Hypothetical protein. (168 aa)    
Predicted Functional Partners:
RAM_21120
Hypothetical protein; COG1657 Squalene cyclase.
 
     0.799
ligC-2
COG1793 ATP-dependent DNA ligase.
       0.549
Lig-3
ATP-dependent DNA ligase; COG3285 Predicted eukaryotic-type DNA primase.
       0.549
RAM_32435
Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases.
 
     0.539
RAM_21840
Hypothetical protein.
 
     0.513
RAM_08805
Glyoxalase/bleomycin resistance protein/dioxygenase.
 
     0.452
RAM_21685
Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases.
 
     0.426
RAM_13775
Hypothetical protein.
 
     0.425
RAM_02170
Hypothetical protein; COG3324 Predicted enzyme related to lactoylglutathione lyase.
 
     0.412
RAM_14450
Hypothetical protein.
 
     0.412
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.