STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_21210COG2866 Predicted carboxypeptidase. (439 aa)    
Predicted Functional Partners:
RAM_01695
COG5640 Secreted trypsin-like serine protease.
  
 
 0.666
RAM_13015
COG5640 Secreted trypsin-like serine protease.
  
 
 0.643
RAM_10435
COG5640 Secreted trypsin-like serine protease.
  
 
 0.604
RAM_11385
COG5640 Secreted trypsin-like serine protease.
  
 
 0.561
RAM_41415
COG5640 Secreted trypsin-like serine protease.
  
 
 0.518
RAM_14115
COG5640 Secreted trypsin-like serine protease.
  
 
 0.517
RAM_21215
Hypothetical protein.
       0.500
RAM_10830
COG5640 Secreted trypsin-like serine protease.
  
 
 0.480
RAM_47480
Isoniazid inducible gene protein IniC; COG0699 Predicted GTPases (dynamin-related).
 
 
  0.462
RAM_40185
COG3629 DNA-binding transcriptional activator of the SARP family.
 
     0.459
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.