STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_21245Hypothetical protein. (262 aa)    
Predicted Functional Partners:
RAM_23245
Lysyl tRNA synthetase-like protein.
  
     0.693
RAM_15770
Lysyl tRNA synthetase-like protein.
  
     0.683
RAM_27160
Hypothetical protein.
  
     0.678
RAM_44810
Hypothetical protein.
  
     0.677
RAM_08690
Lysyl tRNA synthetase-like protein.
  
     0.674
RAM_37470
Lysyl tRNA synthetase-like protein.
  
     0.673
rbpA
Electron transport protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.546
RAM_21240
Hypothetical protein; COG0613 Predicted metal-dependent phosphoesterases (PHP family).
       0.544
RAM_03010
COG2030 Acyl dehydratase.
  
     0.537
DapE
COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
 
     0.536
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.