STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_21280COG3860 Uncharacterized protein conserved in bacteria. (199 aa)    
Predicted Functional Partners:
RAM_21285
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
       0.572
RAM_21290
Acyl carrier protein; COG3321 Polyketide synthase modules and related proteins.
       0.572
RAM_21295
Hypothetical protein.
       0.572
RAM_21300
Hypothetical protein; Belongs to the WXG100 family.
       0.572
RAM_21305
Hypothetical protein.
       0.568
RAM_34430
Hypothetical protein; COG4632 Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase.
  
    0.432
RAM_43935
COG0477 Permeases of the major facilitator superfamily.
 
     0.418
RAM_01495
COG0477 Permeases of the major facilitator superfamily.
 
     0.416
RAM_12145
COG0477 Permeases of the major facilitator superfamily.
 
     0.415
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.