STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_21365Two-component system response regulator; COG2203 FOG: GAF domain. (245 aa)    
Predicted Functional Partners:
RAM_21360
Phosphatase.
 
     0.811
RAM_33565
Hypothetical protein.
 
     0.757
RAM_33570
Hypothetical protein.
  
     0.716
RAM_28455
Hypothetical protein.
  
     0.695
RAM_21370
Two-component system response regulator; COG2203 FOG: GAF domain.
 
    
0.663
RAM_21350
Hypothetical protein; COG3707 Response regulator with putative antiterminator output domain.
  
     0.633
RAM_37985
Hypothetical protein; COG3707 Response regulator with putative antiterminator output domain.
  
     0.631
RAM_33555
Hypothetical protein.
  
     0.626
Lig-5
ATP-dependent DNA ligase; COG3285 Predicted eukaryotic-type DNA primase.
       0.526
RAM_00765
Pyridoxamine 5'-phosphate oxidase.
 
     0.422
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.