STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_21370Two-component system response regulator; COG2203 FOG: GAF domain. (248 aa)    
Predicted Functional Partners:
Lig-5
ATP-dependent DNA ligase; COG3285 Predicted eukaryotic-type DNA primase.
       0.762
RAM_28455
Hypothetical protein.
 
     0.738
RAM_33570
Hypothetical protein.
 
     0.726
RAM_33555
Hypothetical protein.
 
     0.712
RAM_21365
Two-component system response regulator; COG2203 FOG: GAF domain.
 
    
0.664
RAM_21360
Phosphatase.
       0.533
RAM_11880
Hypothetical protein; COG0460 Homoserine dehydrogenase.
  
     0.502
RAM_38530
Molybdopterin binding domain-containing oxidoreductase; COG2041 Sulfite oxidase and related enzymes.
  
     0.479
RAM_02455
Molybdopterin binding domain-containing oxidoreductase; COG2041 Sulfite oxidase and related enzymes.
  
     0.419
RAM_21380
Hypothetical protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.408
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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