STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_21395COG1309 Transcriptional regulator. (187 aa)    
Predicted Functional Partners:
RAM_21400
Integral membrane protein.
 
     0.705
RAM_21390
Alpha/beta hydrolase; COG0657 Esterase/lipase.
 
     0.639
RAM_21385
COG3315 O-Methyltransferase involved in polyketide biosynthesis.
 
     0.603
RAM_17010
COG1309 Transcriptional regulator.
  
     0.566
RAM_17640
COG1309 Transcriptional regulator.
  
     0.469
RAM_36460
COG1733 Predicted transcriptional regulators.
  
     0.461
RAM_32925
COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1B family.
  
     0.435
RAM_39910
COG1309 Transcriptional regulator.
  
     0.430
RAM_32960
COG1309 Transcriptional regulator.
  
     0.417
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.